Shigeyuki YOKOYAMA: search on Z-Library

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1

Genetic diversity of native Bradyrhizobium populations in soybean-growing areas of Northern Thailand

Shutsrirung, Arawan, Yokoyama, Tadashi, Senoo, Keishi, Tajima, Shigeyuki, Minamisawa, Kiwamu, Sameshima, Reiko, Bhromsiri, Ampan, Hisamatsu, Makoto

Journal:

Soil Science & Plant Nutrition

Year:

2003

Language:

english

File:

PDF, 994 KB

english, 2003

2

Studies of the polymerization of diallyl compounds. XXV. Gel point in the polymerization of diallyl esters of aromatic dicarboxylic acids

Akira Matsumoto, Shigeyuki Yokoyama, Tetsuro Khono, Masayoshi Oiwa

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

1977

Language:

english

File:

PDF, 519 KB

english, 1977

3

Generation of high-affinity DNA aptamers using an expanded genetic alphabet

Kimoto, Michiko, Yamashige, Rie, Matsunaga, Ken-ichiro, Yokoyama, Shigeyuki, Hirao, Ichiro

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

4

Cell-free production and stable-isotope labeling of milligram quantities of proteins

Takanori Kigawa, Takashi Yabuki, Yasuhiko Yoshida, Michio Tsutsui, Yutaka Ito, Takehiko Shibata, Shigeyuki Yokoyama

Journal:

Year:

1999

Language:

english

File:

PDF, 364 KB

english, 1999

5

Species-specific probing for the polymerase chain reaction product of ammonia monooxygenase gene amplified from DNA mixtures of Nitrosomonas europaea and Nitrosolobus multiformis

Yokoyama, Kazuhira, Kimura, Hideya, Shinozaki, Hiroya, Mizukawa, Nobuhiko, Tajima, Shigeyuki

Journal:

Soil Science & Plant Nutrition

Year:

1998

Language:

english

File:

PDF, 382 KB

english, 1998

6

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution

Yamasaki, Kazuhiko, Kigawa, Takanori, Seki, Motoaki, Shinozaki, Kazuo, Yokoyama, Shigeyuki

Journal:

Trends in Plant Science

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

7

10.1038/19242

Yokoyama, Shigeyuki, Handa, Noriko, Nureki, Osamu, Kurimoto, Kazuki, Kim, Insil, Sakamoto, Hiroshi, Shimura, Yoshiro, Muto, Yutaka

Journal:

Year:

1999

Language:

english

File:

PDF, 647 KB

english, 1999

8

A New Unnatural Base Pair System between Fluorophore and Quencher Base Analogues for Nucleic Acid-Based Imaging Technology

Kimoto, Michiko, Mitsui, Tsuneo, Yamashige, Rie, Sato, Akira, Yokoyama, Shigeyuki, Hirao, Ichiro

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 2.93 MB

english, 2010

9

Structural insight into RNA recognition motifs: versatile molecular Lego building blocks for biological systems

Yutaka Muto, Shigeyuki Yokoyama

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2012

Language:

english

File:

PDF, 1.56 MB

english, 2012

10

The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules

Ikuko Sugiura, Osamu Nureki, Yoshiko Ugaji-Yoshikawa, Sachiko Kuwabara, Atsushi Shimada, Masaru Tateno, Bernard Lorber, Richard Giegé, Dino Moras, Shigeyuki Yokoyama, Michiko Konno

Journal:

Year:

2000

Language:

english

File:

PDF, 467 KB

english, 2000

11

Arabidopsis HDA6 is required for freezing tolerance

Taiko Kim To, Kentaro Nakaminami, Jong-Myong Kim, Taeko Morosawa, Junko Ishida, Maho Tanaka, Shigeyuki Yokoyama, Kazuo Shinozaki, Motoaki Seki

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 495 KB

english, 2011

12

Solution Structure of Ribosomal Protein L16 from Thermus thermophilus HB8

Mitsuhiro Nishimura, Takuya Yoshida, Mikako Shirouzu, Takaho Terada, Seiki Kuramitsu, Shigeyuki Yokoyama, Tadayasu Ohkubo, Yuji Kobayashi

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.14 MB

english, 2004

13

Structural Basis for Substrate Selection by T7 RNA Polymerase

Dmitry Temiakov, Vsevolod Patlan, Michael Anikin, William T McAllister, Shigeyuki Yokoyama, Dmitry G Vassylyev

Journal:

Year:

2004

Language:

english

File:

PDF, 694 KB

english, 2004

14

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

Tagami, Shunsuke, Sekine, Shun-ichi, Kumarevel, Thirumananseri, Hino, Nobumasa, Murayama, Yuko, Kamegamori, Syunsuke, Yamamoto, Masaki, Sakamoto, Kensaku, Yokoyama, Shigeyuki

Journal:

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

15

Structural basis of transcription by bacterial and eukaryotic RNA polymerases

Shun-ichi Sekine, Shunsuke Tagami, Shigeyuki Yokoyama

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.76 MB

english, 2012

16

Autoprocessing mechanism of severe acute respiratory syndrome coronavirus 3C-like protease (SARS-CoV 3CL pro ) from its polyproteins

Muramatsu, Tomonari, Kim, Yong-Tae, Nishii, Wataru, Terada, Takaho, Shirouzu, Mikako, Yokoyama, Shigeyuki

Journal:

Year:

2013

Language:

english

File:

PDF, 839 KB

english, 2013

17

Methyl transfer by substrate signaling from a knotted protein fold

Christian, Thomas, Sakaguchi, Reiko, Perlinska, Agata P, Lahoud, Georges, Ito, Takuhiro, Taylor, Erika A, Yokoyama, Shigeyuki, Sulkowska, Joanna I, Hou, Ya-Ming

Journal:

Nature Structural and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 3.40 MB

english, 2016

18

The Origin and Evolution of Nucleosynthetic Sr Isotope Variability in Calcium and Aluminum-rich Refractory Inclusions

Myojo, Kunihiro, Yokoyama, Tetsuya, Okabayashi, Satoki, Wakaki, Shigeyuki, Sugiura, Naoji, Iwamori, Hikaru

Journal:

The Astrophysical Journal

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

19

Molecular Mechanism of Codon Recognition by tRNA Species with Modified Uridine in the First Position of the Anticodon

Shigeyuki Yokoyama, Tatsuo Watanabe, Katsutoshi Murao, Hisayuki Ishikura, Ziro Yamaizumi, Susumu Nishimura and Tatsuo Miyazawa

Journal:

Proceedings of the National Academy of Sciences

Year:

1985

Language:

english

File:

PDF, 851 KB

english, 1985

20

An Operational RNA Code for Amino Acids and Possible Relationship to Genetic Code

Paul Schimmel, Richard Giege, Dino Moras and Shigeyuki Yokoyama

Journal:

Proceedings of the National Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 1.21 MB

english, 1993

21

Structure, dynamics and interaction of p54nrb/NonO RRM1 with 5' Splice Site RNA sequence

Duvignaud, Jean-Baptiste, Bédard, Mikael, Nagata, Takashi, Muto, Yutaka, Yokoyama, Shigeyuki, Gagné, Stéphane M., Vincent, Michel

Journal:

Year:

2016

Language:

english

File:

PDF, 1.98 MB

english, 2016

22

Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains

Kazuhiko Yamasaki, Takanori Kigawa, Makoto Inoue, Satoru Watanabe, Masaru Tateno, Motoaki Seki, Kazuo Shinozaki, Shigeyuki Yokoyama

Journal:

Plant Physiology and Biochemistry

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

23

Simple Foot Tapping Test as a Quantitative Objective Assessment of Cervical Myelopathy

Numasawa, Takuya, Ono, Atsushi, Wada, Kanichiro, Yamasaki, Yoshihito, Yokoyama, Toru, Aburakawa, Shuichi, Takeuchi, Kazunari, Kumagai, Gentaro, Kudo, Hitoshi, Umeda, Takashi, Nakaji, Shigeyuki, Toh, S

Journal:

Year:

2012

Language:

english

File:

PDF, 480 KB

english, 2012

24

Regional Polysterism in the GTP-Bound Form of the Human c-Ha-Ras Protein †,‡

Ito, Yutaka, Yamasaki, Kazuhiko, Iwahara, Junji, Terada, Tohru, Kamiya, Akihide, Shirouzu, Mikako, Muto, Yutaka, Kawai, Gota, Yokoyama, Shigeyuki, Laue, Ernest D., Wälchli, Markus, Shibata, Takehiko,

Journal:

Year:

1997

Language:

english

File:

PDF, 399 KB

english, 1997

25

Evolution of the mitochondrial genetic code II. Reassignment of codon AUA from isoleucine to methionine

Syozo Osawa, Takeshi Ohama, Thomas H. Jukes, Kimitsuna Watanabe, Shigeyuki Yokoyama

Journal:

Journal of Molecular Evolution

Year:

1989

Language:

english

File:

PDF, 748 KB

english, 1989

26

Structural Basis for Double-Sieve Discrimination of L-Valine from L-Isoleucine and L-Threonine by the Complex of tRNAVal and Valyl-tRNA Synthetase

Shuya Fukai, Osamu Nureki, Shun-ichi Sekine, Atsushi Shimada, Jianshi Tao, Dmitry G. Vassylyev, Shigeyuki Yokoyama

Journal:

Year:

2000

Language:

english

File:

PDF, 1.23 MB

english, 2000

27

Interhelical interactions between D92 and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the proton transport of Acetabularia rhodopsin II

Tamogami, Jun, Kikukawa, Takashi, Ohkawa, Keisuke, Ohsawa, Noboru, Nara, Toshifumi, Demura, Makoto, Miyauchi, Seiji, Kimura-Someya, Tomomi, Shirouzu, Mikako, Yokoyama, Shigeyuki, Shimono, Kazumi, Kamo

Journal:

Journal of Photochemistry and Photobiology B: Biology

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

28

Guanine-nucleotide binding activity, interaction with GTPase-activating protein and solution conformation of the human c-Ha-Ras protein catalytic domain are retained upon deletion of C-terminal 18 amino acid residues

Junko Fujita-Yoshigaki, Yutaka Ito, Kazuhiko Yamasaki, Yutaka Muto, Tatsuo Miyazawa, Susumu Nishimura, Shigeyuki Yokoyama

Journal:

The Protein Journal

Year:

1992

Language:

english

File:

PDF, 1021 KB

english, 1992

29

Structure of a T7 RNA polymerase elongation complex at 2.9 Å resolution

Tahirov, Tahir H., Temiakov, Dmitry, Anikin, Michael, Patlan, Vsevolod, McAllister, William T., Vassylyev, Dmitry G., Yokoyama, Shigeyuki

Journal:

Year:

2002

Language:

english

File:

PDF, 748 KB

english, 2002

30

Lessons from Structural Genomics *

Terwilliger, Thomas C., Stuart, David, Yokoyama, Shigeyuki

Journal:

Annual Review of Biophysics

Year:

2009

Language:

english

File:

PDF, 265 KB

english, 2009

31

Crystal Structure Analysis of the PHD Domain of the Transcription Co-activator Pygopus

Yoshihiro Nakamura, Takashi Umehara, Hiroaki Hamana, Yoshihide Hayashizaki, Makoto Inoue, Takanori Kigawa, Mikako Shirouzu, Takaho Terada, Akiko Tanaka, Balasundaram Padmanabhan, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.21 MB

english, 2007

32

Operando Observation of Sulfur Species Poisoning Polymer Electrolyte Fuel Cell Studied by Near Ambient Pressure Hard X-ray Photoelectron Spectroscopy

Yu, Liwei, Takagi, Yasumasa, Nakamura, Takahiro, Sakata, Tomohiro, Uruga, Tomoya, Tada, Mizuki, Iwasawa, Yasuhiro, Masaoka, Shigeyuki, Yokoyama, Toshihiko

Journal:

The Journal of Physical Chemistry C

Year:

2018

Language:

english

File:

PDF, 8.19 MB

english, 2018

33

Genetic Incorporation of a Photo-Crosslinkable Amino Acid Reveals Novel Protein Complexes with GRB2 in Mammalian Cells

Nobumasa Hino, Masaaki Oyama, Aya Sato, Takahito Mukai, Fumie Iraha, Akiko Hayashi, Hiroko Kozuka-Hata, Tadashi Yamamoto, Shigeyuki Yokoyama, Kensaku Sakamoto

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 851 KB

english, 2011

34

Crystal structure analysis of a hypothetical protein (MJ0366) from Methanocaldococcus jannaschii revealed a novel topological arrangement of the knot fold

Thiruselvam, Viswanathan, Kumarevel, Thirumananseri, Karthe, Ponnuraj, Kuramitsu, Seiki, Yokoyama, Shigeyuki, Ponnuswamy, Mondikalipudur Nanjappagounder

Journal:

Biochemical and Biophysical Research Communications

Year:

2016

Language:

english

File:

PDF, 2.22 MB

english, 2016

35

Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP

Sengoku, Toru, Suzuki, Takehiro, Dohmae, Naoshi, Watanabe, Chiduru, Honma, Teruki, Hikida, Yasushi, Yamaguchi, Yoshiki, Takahashi, Hideyuki, Yokoyama, Shigeyuki, Yanagisawa, Tatsuo

Journal:

Nature Chemical Biology

Year:

2018

Language:

english

File:

PDF, 2.70 MB

english, 2018

36

NMR solution structures of actin depolymerizing factor homology domains

Alexander K. Goroncy, Seizo Koshiba, Naoya Tochio, Tadashi Tomizawa, Manami Sato, Makato Inoue, Satoru Watanabe, Yoshihide Hayashizaki, Akiko Tanaka, Takanori Kigawa, Shigeyuki Yokoyama

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 1.45 MB

english, 2009

37

Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III

Haruhiko Ehara, Shun-ichi Sekine, Shigeyuki Yokoyama

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 664 KB

english, 2011

38

Crystal structure of TT1662 from Thermus thermophilus HB8: A member of the α/β hydrolase fold enzymes

Kazutaka Murayama, Mikako Shirouzu, Takaho Terada, Seiki Kuramitsu, Shigeyuki Yokoyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 152 KB

english, 2005

39

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies

Naohiro Kobayashi, Junji Iwahara, Seizo Koshiba, Tadashi Tomizawa, Naoya Tochio, Peter Güntert, Takanori Kigawa, Shigeyuki Yokoyama

Journal:

Journal of Biomolecular NMR

Year:

2007

Language:

english

File:

PDF, 1.28 MB

english, 2007

40

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator

Yoshihiro Agari, Aiko Kashihara, Shigeyuki Yokoyama, Seiki Kuramitsu, Akeo Shinkai

Journal:

Molecular Microbiology

Year:

2008

Language:

english

File:

PDF, 734 KB

english, 2008

41

Comparative expression analysis of multiple PDK genes in Xenopus laevis during oogenesis, maturation, fertilization, and early embryogenesis

Alexander A. Tokmakov, Yumiko Terazawa, Mariko Ikeda, Mikako Shirouzu, Yasuo Fukami, Shigeyuki Yokoyama

Journal:

Gene Expression Patterns

Year:

2009

Language:

english

File:

PDF, 650 KB

english, 2009

42

Structural Basis for the Exclusive Specificity of Slac2-a/Melanophilin for the Rab27 GTPases

Mutsuko Kukimoto-Niino, Ayako Sakamoto, Eiko Kanno, Kyoko Hanawa-Suetsugu, Takaho Terada, Mikako Shirouzu, Mitsunori Fukuda, Shigeyuki Yokoyama

Journal:

Year:

2008

Language:

english

File:

PDF, 3.03 MB

english, 2008

43

An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing

Hideki Aihara, Yutaka Ito, Hitoshi Kurumizaka, Tohru Terada, Shigeyuki Yokoyama, Takehiko Shibata

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 2.22 MB

english, 1997

44

Molecular cloning and expression analysis of PDK family genes in Xenopus laevis reveal oocyte-specific PDK isoform

Yumiko Terazawa, Alexander A. Tokmakov, Mikako Shirouzu, Shigeyuki Yokoyama

Journal:

Biochemical and Biophysical Research Communications

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

45

Structural Basis for Substrate Recognition by the Editing Domain of Isoleucyl-tRNA Synthetase

Ryuya Fukunaga, Shigeyuki Yokoyama

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 877 KB

english, 2006

46

RNA aptamers that specifically bind to the Ras-binding domain of Raf-1

Michiko Kimoto, Kensaku Sakamoto, Mikako Shirouzu, Ichiro Hirao, Shigeyuki Yokoyama

Journal:

Year:

1998

Language:

english

File:

PDF, 287 KB

english, 1998

47

Conformational Rigidity of N 4 -Acetyl-2′-O-methylcytidine Found in tRNA of Extremely Thermophilic Archaebacteria (Archaea)

Kawai, Gota, Hashizume, Takeshi, Yasuda, Masayuki, Miyazawa, Tatsuo, McCloskey, James A., Yokoyama, Shigeyuki

Journal:

Nucleosides and Nucleotides

Year:

1992

Language:

english

File:

PDF, 592 KB

english, 1992

48

c-Ha-Ras mutants with point mutations in Gln-Val-Val region have reduced inhibitory activity toward cathepsin B

Hiwasa, Takaki, Fujita-Yoshigaki, Junko, Shirouzu, Mikako, Koide, Hiroshi, Sawada, Toshie, Sakiyama, Shigeru, Yokoyama, Shigeyuki

Journal:

Year:

1993

Language:

english

File:

PDF, 759 KB

english, 1993

49

The C-Terminal Domain of the Archaeal Leucyl-tRNA Synthetase Prevents Misediting of Isoleucyl-tRNA Ile†

Fukunaga, Ryuya, Yokoyama, Shigeyuki

Journal:

Year:

2007

Language:

english

File:

PDF, 681 KB

english, 2007

50

Cholesterol Doping Induced Enhanced Stability of Bicelles

Sasaki, Hirotaka, Fukuzawa, Seketsu, Kikuchi, Jun, Yokoyama, Shigeyuki, Hirota, Hiroshi, Tachibana, Kazuo

Journal:

Year:

2003

Language:

english

File:

PDF, 77 KB

english, 2003

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